[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 67 items for (author: takano & y)

EMDB-35029:
SARS-CoV2 spike protein with ACE2, no ACE2 binding.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35030:
SARS-CoV2 spike protein with ACE2. 1 ACE2 bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35031:
SARS-CoV2 spike protein with ACE2. 2 ACE2 bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35032:
SARS-CoV2 spike protein with ACE2. 3 ACE2 bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35036:
SARS-CoV2 spike protein with ACE2 decoy.no ACE2 decoy binding
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35037:
SARS-CoV2 spike protein with ACE2 decoy. 1 ACE2 decoy bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35038:
SARS-CoV2 spike protein with ACE2 decoy. 1 ACE2 decoy bound and 2 RBD up form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35039:
SARS-CoV2 spike protein with ACE2 decoy. 2 ACE2 decoy bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35040:
SARS-CoV2 spike protein with ACE2 decoy. 3 ACE2 decoy bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-36345:
RBD of SARS-CoV2 spike protein with ACE2 decoy
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

PDB-8jje:
RBD of SARS-CoV2 spike protein with ACE2 decoy
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-25706:
Cryo-EM structure of human SIMC1-SLF2 complex
Method: single particle / : Maeda S, Oravcova M, Boddy MN, Otomo T

PDB-7t5p:
Cryo-EM structure of human SIMC1-SLF2 complex
Method: single particle / : Maeda S, Oravcova M, Boddy MN, Otomo T

EMDB-25446:
Cryo-EM structure of Arabidopsis Ago10-guide RNA complex
Method: single particle / : Xiao Y, MacRae IJ

EMDB-25482:
Cryo-EM structure of Arabidopsis Ago10-guide-target RNA complex in a bent duplex conformation
Method: single particle / : Xiao Y, MacRae IJ

PDB-7sva:
Cryo-EM structure of Arabidopsis Ago10-guide RNA complex
Method: single particle / : Xiao Y, MacRae IJ

PDB-7swq:
Cryo-EM structure of Arabidopsis Ago10-guide-target RNA complex in a bent duplex conformation
Method: single particle / : Xiao Y, MacRae IJ

EMDB-31572:
Minor cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHHs , focused refinement of K-874A, RBD and NTD
Method: single particle / : Song C, Katayama K, Murata K

EMDB-31573:
Minor cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHHs
Method: single particle / : Song C, Katayama K, Murata K

EMDB-31574:
Minor cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHH, composite map
Method: single particle / : Song C, Murata K, Katayama K

EMDB-31575:
Major cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHHs, focussed refinement of K-874A, RBD and NTD
Method: single particle / : Song C, Katayama K, Murata K

EMDB-31576:
Major cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHHs
Method: single particle / : Song C, Katayama K, Murata K

EMDB-31577:
Major cryo-EM structure of S protein trimer of SARS-CoV2 with K-874, composite map
Method: single particle / : Song C, Katayama K, Murata K

EMDB-31578:
Cryo-EM structure of S protein trimer of SARS-CoV2
Method: single particle / : Song C, Murata K, Katayama K

PDB-7fg2:
Minor cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHH, composite map
Method: single particle / : Song C, Murata K, Katayama K

PDB-7fg3:
Major cryo-EM structure of S protein trimer of SARS-CoV2 with K-874, composite map
Method: single particle / : Song C, Katayama K, Murata K

PDB-7fg7:
Cryo-EM structure of S protein trimer of SARS-CoV2
Method: single particle / : Song C, Murata K, Katayama K

EMDB-11657:
CryoEM structure of a human gamma-aminobutyric acid receptor, the GABA(A)R-beta3 homopentamer, in complex with histamine and megabody Mb25 in lipid nanodisc
Method: single particle / : Nakane T, Kotecha A, Sente A, Yamashita K, McMullan G, Masiulis S, Brown PMGE, Grigoras IT, Malinauskaite L, Malinauskas T, Miehling J, Yu L, Karia D, Pechnikova EV, de Jong E, Keizer J, Bischoff M, McCormack J, Tiemeijer P, Hardwick SW, Chirgadze DY, Murshudov G, Aricescu AR, Scheres SHW

PDB-7a5v:
CryoEM structure of a human gamma-aminobutyric acid receptor, the GABA(A)R-beta3 homopentamer, in complex with histamine and megabody Mb25 in lipid nanodisc
Method: single particle / : Nakane T, Kotecha A, Sente A, Yamashita K, McMullan G, Masiulis S, Brown PMGE, Grigoras IT, Malinauskaite L, Malinauskas T, Miehling J, Yu L, Karia D, Pechnikova EV, de Jong E, Keizer J, Bischoff M, McCormack J, Tiemeijer P, Hardwick SW, Chirgadze DY, Murshudov G, Aricescu AR, Scheres SHW

EMDB-22375:
Cryo-EM structure of human ATG9A in amphipols
Method: single particle / : Maeda S, Otomo T

EMDB-22376:
cryo-EM structure of human ATG9A in nanodiscs
Method: single particle / : Maeda S, Otomo T

EMDB-22377:
cryo-EM structure of human ATG9A in LMNG micelles
Method: single particle / : Maeda S, Otomo T

PDB-7jlo:
Cryo-EM structure of human ATG9A in amphipols
Method: single particle / : Maeda S, Otomo T

PDB-7jlp:
cryo-EM structure of human ATG9A in nanodiscs
Method: single particle / : Maeda S, Otomo T

PDB-7jlq:
cryo-EM structure of human ATG9A in LMNG micelles
Method: single particle / : Maeda S, Otomo T

EMDB-11493:
Subtomogram averaging of SARS-CoV-2 Spike Protein from unconcentrated virions: consensus structure of prefusion S trimers
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11494:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (3 closed RBDs)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11495:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (1 open RBD)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11496:
Subtomogram averaging of SARS-CoV-2 spike protein from unconcentrated virions: Prefusion Class (2 open RBDs)
Method: subtomogram averaging / : Ke Z, Oton J, Zivanov J, Lu JM, Peukes J, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11497:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 3 Closed RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-11498:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 2 Closed + 1 Weak RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

PDB-6zwv:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 3 Closed RBDs
Method: single particle / : Ke Z, Qu K, Nakane T, Xiong X, Cortese M, Zila V, Scheres SHW, Briggs JAG

EMDB-10944:
Head segment of the S.cerevisiae condensin holocomplex in presence of ATP
Method: single particle / : Merkel F, Haering CH, Hassler M, Lee BG, Lowe J

PDB-6yvd:
Head segment of the S.cerevisiae condensin holocomplex in presence of ATP
Method: single particle / : Merkel F, Haering CH, Hassler M, Lee BG, Lowe J

EMDB-10951:
Condensin complex from S.cerevisiae ATP-free apo non-engaged state: overall map
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-10952:
Condensin complex from S.cerevisiae ATP-free apo bridged state: focused refinement on head segment
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Haering CH, Aragon L, Lowe J

EMDB-10964:
Rod-shaped arm segment of the S.cerevisiae condensin complex in presence of ATP
Method: single particle / : Merkel F, Haering CH, Hassler M, Lowe J, Lee BG

PDB-6yvu:
Condensin complex from S.cerevisiae ATP-free apo non-engaged state
Method: single particle / : Lee BG, Cawood C, Gutierrez-Escribano P, Nakane T, Merkel F, Hassler M, Aragon L, Haering CH, Lowe J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more